Detailed information of matrix profile UN0549.1

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Profile summary

Name: GCM1::SOX2
Matrix ID: UN0549.1
Class: GCM domain factors::High-mobility group (HMG) domain factors
Family: GCM::SOX-related factors
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation:
Uniprot ID: P48431   Q9NP62  
Source: 26550823
Comment:

Sequence logo

Frequency matrix

         
A [ 293 434 636 1 636 636 24 179 48 279 12 0 13 103 3 636 1 ]
C [ 83 202 6 636 34 49 5 15 216 26 636 636 636 97 433 15 155 ]
G [ 343 150 5 21 0 29 18 408 175 245 0 8 10 540 1 8 16 ]
T [ 95 59 0 13 2 15 636 34 197 86 0 0 14 7 203 2 481 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0549.1 UN0549 1 GCM1::SOX2 Homo sapiens
GCM::SOX-related factors GCM domain factors::High-mobility group (HMG) domain factors
UN0549.2 UN0549 2 GCM1::SOX2 Homo sapiens
GCM::SOX-related factors GCM domain factors::High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: