Detailed information of matrix profile UN0687.1

  1. Home
  2. Matrix > UN0687.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: NGA4
Matrix ID: UN0687.1
Class: B3
Family: RAV
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation:
Uniprot ID: O82595  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 104 85 34 276 3 2 3 2 265 216 122 135 93 ]
C [ 49 53 91 2 267 280 1 4 10 29 79 47 42 ]
G [ 45 58 5 6 1 2 3 276 6 19 54 43 72 ]
T [ 89 91 157 3 16 3 280 5 6 23 32 62 80 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0687.1 UN0687 1 NGA4 Arabidopsis thaliana
RAV B3
UN0687.2 UN0687 2 NGA4 Arabidopsis thaliana
RAV B3
     

-log(P-value) = 162.274

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: