Detailed information of matrix profile UN0705.1

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Profile summary

Name: hlh-26
Matrix ID: UN0705.1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
Collection: UNVALIDATED
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: PBM
Validation:
Uniprot ID: Q18053  
Source: 19632181
Comment: Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to vertebrates

Sequence logo

Frequency matrix

         
A [ 500 1000 0 1000 0 0 0 0 0 ]
C [ 0 0 1000 0 1000 0 0 0 500 ]
G [ 500 0 0 0 0 1000 0 1000 0 ]
T [ 0 0 0 0 0 0 1000 0 500 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0705.1 UN0705 1 hlh-26 Caenorhabditis elegans
bHLH-ZIP Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: