Detailed information of matrix profile UN0706.1

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Profile summary

Name: hlh-27
Matrix ID: UN0706.1
Class: Basic helix-loop-helix factors (bHLH)
Family: Hairy-related factors
Collection: UNVALIDATED
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: PBM
Validation:
Uniprot ID: Q18056  
Source: 19632181
Comment: Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to vertebrates

Sequence logo

Frequency matrix

         
A [ 0 105 0 366 0 0 0 0 ]
C [ 1000 0 902 0 24 0 30 727 ]
G [ 0 895 0 634 0 1000 273 136 ]
T [ 0 0 98 0 976 0 697 136 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0706.1 UN0706 1 hlh-27 Caenorhabditis elegans
Hairy-related factors Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: