Detailed information of matrix profile UN0728.1

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Profile summary

Name: ztf-9
Matrix ID: UN0728.1
Class: C2H2 zinc finger factors
Family: BED zinc finger factors
Collection: UNVALIDATED
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: PBM
Validation:
Uniprot ID: Q23458  
Source: 25905672
Comment: Class and TF information inffered based on sequence similarity search using DELTA-BLAST within Nr. database and limiting the search to H. sapiens, R. norvegicus and M. musculusto shorten the hit list

Sequence logo

Frequency matrix

         
A [ 2 2 829 2 995 2 2 2 ]
C [ 2 2 2 995 2 2 2 250 ]
G [ 2 995 167 2 2 2 995 2 ]
T [ 993 2 2 2 2 995 2 745 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0728.1 UN0728 1 ztf-9 Caenorhabditis elegans
BED zinc finger factors C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: