Detailed information of matrix profile UN0734.1

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Profile summary

Name: lin-15B
Matrix ID: UN0734.1
Class: C2H2 zinc finger factors
Family: BED zinc finger factors
Collection: UNVALIDATED
Taxon: Nematodes
Species: Caenorhabditis elegans
Data Type: ChIP-seq
Validation:
Uniprot ID: Q27395  
Source: GTRD
Comment: Class and TF information is inferred from the human ortholog to lin-15B, obtained from MARRVEL db.

Sequence logo

Frequency matrix

         
A [ 13 171 174 4 138 2 299 2 6 8 13 112 42 41 20 28 ]
C [ 299 32 8 19 3 0 3 0 326 1 291 10 147 21 12 13 ]
G [ 9 122 132 10 192 334 32 331 2 326 8 199 50 10 20 258 ]
T [ 15 11 22 303 3 0 2 3 2 1 24 15 97 264 284 37 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0734.1 UN0734 1 lin-15B Caenorhabditis elegans
BED zinc finger factors C2H2 zinc finger factors
     

-log(P-value) = 79.4627

TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

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