Detailed information of matrix profile UN0836.1

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Profile summary

Name: SHN2
Matrix ID: UN0836.1
Class: AP2/EREBP
Family: ERF/DREB
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q9LFN7  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 188 150 138 91 44 147 31 56 363 116 159 169 0 78 134 31 9 219 34 134 500 ]
C [ 34 3 631 19 13 600 13 9 378 22 31 513 0 28 616 6 28 406 19 122 144 ]
G [ 663 788 25 844 919 0 900 928 3 781 759 13 944 878 13 941 913 44 856 719 75 ]
T [ 116 59 206 47 25 253 56 6 256 81 50 306 56 16 238 22 50 331 91 25 281 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0836.1 UN0836 1 SHN2 Arabidopsis thaliana
ERF/DREB AP2/EREBP
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: