Detailed information of matrix profile MA0162.5

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Profile summary
Name: EGR1
Matrix ID: MA0162.5
Class: C2H2 zinc finger factors
Family: Three-zinc finger Kruppel-related
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 16041365
Uniprot ID: P18146  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 14508 642 5110 227 1440 314 22297 153 4696 969 ]
C [ 10303 28403 1131 29338 27321 28958 5420 29507 2806 25196 ]
G [ 3854 756 22237 665 1455 698 2122 699 20544 2157 ]
T [ 1933 797 2120 368 382 628 759 239 2552 2276 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0162.1 MA0162 1 Egr1 Mus musculus
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.2 MA0162 2 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.3 MA0162 3 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.4 MA0162 4 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
MA0162.5 MA0162 5 EGR1 Homo sapiens
Three-zinc finger Kruppel-related C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: