Detailed information of matrix profile MA1729.1

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Profile summary
Name: ZNF680
Matrix ID: MA1729.1
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 27852650
Uniprot ID: Q8NEM1  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1457 1789 418 1120 5394 4522 43 5681 5479 494 5661 4020 202 1579 3646 ]
C [ 303 1063 4870 4324 60 17 14 23 13 40 41 808 396 770 469 ]
G [ 3629 1096 133 69 208 1116 5691 44 203 5144 39 163 213 1870 455 ]
T [ 377 1818 345 253 104 111 18 18 71 88 25 775 4955 1547 1196 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1729.1 MA1729 1 ZNF680 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
MA1729.2 MA1729 2 ZNF680 Homo sapiens
More than 3 adjacent zinc fingers C2H2 zinc finger factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0922.1

ChIP-seq Centrality
-log(P-value): 3187.88

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0922.1

ChIP-seq Centrality
-log(P-value): 3316.19

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: