Detailed information of matrix profile UN0469.1

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Profile summary

Name: Six1-2
Matrix ID: UN0469.1
Class: Homeo domain factors
Family: HD-SINE
Collection: UNVALIDATED
Taxon: Urochordates
Species: Ciona intestinalis
Data Type: SELEX
Validation:
Uniprot ID:  
Source: 31267468
Comment: No UniProt ID found.

Sequence logo

Frequency matrix

         
A [ 226 228 270 246 259 239 187 77 24 837 71 57 823 231 267 216 228 277 219 251 ]
C [ 198 190 198 192 243 224 235 41 26 25 22 826 50 220 180 173 186 221 314 237 ]
G [ 331 297 271 211 235 298 340 846 50 72 23 34 75 240 290 195 248 228 223 262 ]
T [ 245 285 261 351 263 239 238 35 900 66 884 83 53 309 262 416 338 274 244 250 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0469.1 UN0469 1 Six1-2 Ciona intestinalis
HD-SINE Homeo domain factors
UN0469.2 UN0469 2 Six1-2 Ciona intestinalis
HD-SINE Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: