Detailed information of matrix profile MA0046.3

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Profile summary
Name: HNF1A
Matrix ID: MA0046.3
Class: Homeo domain factors
Family: POU domain factors
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 9047360
Uniprot ID: P20823  
Source: 23332764
Comment: Data is from Taipale HTSELEX DBD (2013)

Sequence logo

Frequency matrix

         
A [ 6981 376 2914 14149 14149 1274 3340 14149 711 42 14149 14149 1488 ]
C [ 415 1060 2170 3 633 423 3750 9 13 228 237 695 14149 ]
G [ 7168 903 544 246 8 7 4540 339 845 4 1337 1095 655 ]
T [ 636 14149 14149 14 364 14149 2518 651 14149 14149 1638 174 914 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0046.1 MA0046 1 HNF1A Vertebrata
POU domain factors Homeo domain factors
MA0046.2 MA0046 2 HNF1A Homo sapiens
POU domain factors Homeo domain factors
MA0046.3 MA0046 3 HNF1A Homo sapiens
POU domain factors Homeo domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

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GC Content: