Detailed information of matrix profile MA1055.2

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Profile summary
Name: SPL1
Matrix ID: MA1055.2
Class: SBP
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 24477691 16554053
Uniprot ID: Q9SMX9  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1193 1027 422 140 19 3606 54 126 227 2954 989 1216 1188 ]
C [ 663 707 522 43 49 30 3558 50 45 216 773 736 757 ]
G [ 652 660 347 3426 19 10 11 3382 3054 77 428 748 657 ]
T [ 1155 1269 2372 54 3576 17 40 105 337 416 1473 963 1061 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1055.1 MA1055 1 SPL1 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1055.2 MA1055 2 SPL1 Arabidopsis thaliana
SBP
MA1055.3 MA1055 3 SPL1 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     

-log(P-value) = 2664.07

TFFM details

TFFM ID: TFFM0816.1

ChIP-seq Centrality
-log(P-value): 5209.66

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0816.1

ChIP-seq Centrality
-log(P-value): 5317.9

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: