Detailed information of matrix profile MA1059.2

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Profile summary
Name: SPL5
Matrix ID: MA1059.2
Class: C2H2 zinc finger factors
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 16554053
Uniprot ID: Q9S758  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 244 273 102 25 0 0 598 0 0 0 546 170 ]
C [ 107 73 150 153 0 0 0 598 0 0 8 259 ]
G [ 109 123 89 36 598 0 0 0 598 598 1 19 ]
T [ 138 129 257 384 0 598 0 0 0 0 43 150 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1059.1 MA1059 1 SPL5 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1059.2 MA1059 2 SPL5 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1059.3 MA1059 3 SPL5 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0390.1

ChIP-seq Centrality
-log(P-value): 19736.1

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0390.1

ChIP-seq Centrality
-log(P-value): 19686.9

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: