Detailed information of matrix profile MA1059.3

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Profile summary
Name: SPL5
Matrix ID: MA1059.3
Class: C3H(C),C2HC zinc fingers factors
Family: SBP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 16554053
Uniprot ID: Q9S758  
Source: 27203113
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 25 0 0 598 0 0 0 546 170 ]
C [ 153 0 0 0 598 0 0 8 259 ]
G [ 36 598 0 0 0 598 598 1 19 ]
T [ 384 0 598 0 0 0 0 43 150 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1059.1 MA1059 1 SPL5 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1059.2 MA1059 2 SPL5 Arabidopsis thaliana
SBP C2H2 zinc finger factors
MA1059.3 MA1059 3 SPL5 Arabidopsis thaliana
SBP C3H(C),C2HC zinc fingers factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

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Consensus:

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GC Content: