Detailed information of matrix profile MA1068.2

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Profile summary
Name: TGA2
Matrix ID: MA1068.2
Class: Basic leucine zipper factors (bZIP)
Family: Group D
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 10662863 10662863
Uniprot ID: P43273  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 459 327 290 655 2 3 1221 3 39 1 63 1224 28 222 448 ]
C [ 220 235 130 258 4 1 3 1182 2 2 1154 0 360 573 216 ]
G [ 214 211 613 297 3 1152 3 5 1188 3 6 5 264 136 231 ]
T [ 337 457 197 20 1221 74 3 40 1 1224 7 1 578 299 335 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1068.1 MA1068 1 TGA2 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1068.2 MA1068 2 TGA2 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1068.3 MA1068 3 TGA2 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
     

-log(P-value) = 1901.27

TFFM details

TFFM ID: TFFM0817.1

ChIP-seq Centrality
-log(P-value): 1919.62

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0817.1

ChIP-seq Centrality
-log(P-value): 1957.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: