Detailed information of matrix profile MA1068.2

  1. Home
  2. Matrix > MA1068.2

Profile summary
Name: TGA2
Matrix ID: MA1068.2
Class: Basic leucine zipper factors (bZIP)
Family: Group D
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 10662863 10662863
Uniprot ID: P43273  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 335 299 578 1 7 1224 1 40 3 74 1221 20 197 457 337 ]
C [ 231 136 264 5 6 3 1188 5 3 1152 3 297 613 211 214 ]
G [ 216 573 360 0 1154 2 2 1182 3 1 4 258 130 235 220 ]
T [ 448 222 28 1224 63 1 39 3 1221 3 2 655 290 327 459 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1068.1 MA1068 1 TGA2 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1068.2 MA1068 2 TGA2 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
MA1068.3 MA1068 3 TGA2 Arabidopsis thaliana
Group D Basic leucine zipper factors (bZIP)
     

-log(P-value) = 1901.27

TFFM details

TFFM ID: TFFM0817.1

ChIP-seq Centrality
-log(P-value): 1919.62

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0817.1

ChIP-seq Centrality
-log(P-value): 1957.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: