Detailed information of matrix profile MA1146.2

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Profile summary
Name: NR1H4::RXRA
Matrix ID: MA1146.2
Class: Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: SMiLE-seq
Validation: 10744760
Uniprot ID: P19793   Q96RI1  
Source: 28092692
Comment:

Sequence logo

Frequency matrix

         
A [ 653 29 22 24 11 720 144 23 108 763 134 113 25 ]
C [ 55 15 9 49 875 13 121 92 102 112 773 798 383 ]
G [ 280 937 646 101 13 249 75 48 753 78 9 38 71 ]
T [ 11 19 324 826 100 17 660 838 37 48 83 51 521 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1146.1 MA1146 1 NR1H4::RXRA Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
MA1146.2 MA1146 2 NR1H4::RXRA Homo sapiens
Thyroid hormone receptor-related factors (NR1)::RXR-related receptors (NR2) Nuclear receptors with C4 zinc fingers::Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: