Detailed information of matrix profile MA1165.2

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Profile summary
Name: HHO6
Matrix ID: MA1165.2
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: Q9FX84  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 2662 2870 4865 5692 10221 19 10410 435 332 50 1638 2496 3235 3441 ]
C [ 2443 2659 1624 1493 76 32 52 16 71 10484 1723 1775 2118 1763 ]
G [ 1581 1573 1608 1372 107 10366 58 17 105 21 865 3352 1768 1741 ]
T [ 3909 3493 2498 2038 191 178 75 10127 10087 40 6369 2972 3474 3650 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1165.1 MA1165 1 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1165.2 MA1165 2 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1165.3 MA1165 3 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     

-log(P-value) = 4905.58

TFFM details

TFFM ID: TFFM0833.1

ChIP-seq Centrality
-log(P-value): 5317.36

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0833.1

ChIP-seq Centrality
-log(P-value): 5752.13

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: