Detailed information of matrix profile MA1165.2

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Profile summary
Name: HHO6
Matrix ID: MA1165.2
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: Q9FX84  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 3650 3474 2972 6369 40 10087 10127 75 178 191 2038 2498 3493 3909 ]
C [ 1741 1768 3352 865 21 105 17 58 10366 107 1372 1608 1573 1581 ]
G [ 1763 2118 1775 1723 10484 71 16 52 32 76 1493 1624 2659 2443 ]
T [ 3441 3235 2496 1638 50 332 435 10410 19 10221 5692 4865 2870 2662 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1165.1 MA1165 1 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1165.2 MA1165 2 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1165.3 MA1165 3 HHO6 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     

-log(P-value) = 4905.58

TFFM details

TFFM ID: TFFM0833.1

ChIP-seq Centrality
-log(P-value): 5317.36

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0833.1

ChIP-seq Centrality
-log(P-value): 5752.13

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: