Detailed information of matrix profile MA1269.1

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Profile summary
Name: DOF4.5
Matrix ID: MA1269.1
Class: Other C4 zinc finger-type factors
Family: DOF
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10758479
Uniprot ID: O49550  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 182 402 349 600 600 600 0 104 282 235 139 91 67 65 ]
C [ 108 72 7 0 0 0 0 125 15 54 361 48 31 51 ]
G [ 194 47 27 0 0 0 600 57 135 233 45 33 45 24 ]
T [ 116 79 217 0 0 0 0 314 168 78 55 428 457 460 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1269.1 MA1269 1 DOF4.5 Arabidopsis thaliana
DOF Other C4 zinc finger-type factors
MA1269.2 MA1269 2 DOF4.5 Arabidopsis thaliana
DOF Other C4 zinc finger-type factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0325.1

ChIP-seq Centrality
-log(P-value): 4762.08

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0325.1

ChIP-seq Centrality
-log(P-value): 4167.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: