Detailed information of matrix profile MA1270.1

  1. Home
  2. Matrix > MA1270.1

Profile summary
Name: DOF3.2
Matrix ID: MA1270.1
Class: Other C4 zinc finger-type factors
Family: DOF
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 10758479
Uniprot ID: Q9M1E6  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 101 75 177 319 0 0 0 0 135 39 129 129 87 83 89 104 126 132 77 ]
C [ 78 151 111 138 600 0 0 0 0 55 175 211 189 98 55 120 92 92 134 ]
G [ 143 51 27 85 0 0 1 0 0 10 176 107 57 56 59 48 55 88 115 ]
T [ 278 323 285 58 0 600 599 600 465 496 120 153 267 363 397 328 327 288 274 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1270.1 MA1270 1 DOF3.2 Arabidopsis thaliana
DOF Other C4 zinc finger-type factors
MA1270.2 MA1270 2 DOF3.2 Arabidopsis thaliana
DOF Other C4 zinc finger-type factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0261.1

ChIP-seq Centrality
-log(P-value): 11411.6

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0261.1

ChIP-seq Centrality
-log(P-value): 10450.0

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: