Detailed information of matrix profile MA1311.1

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Profile summary
Name: WRKY28
Matrix ID: MA1311.1
Class: GCM domain factors
Family: WRKY
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 11449049
Uniprot ID: Q8VWJ2  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 212 156 107 56 0 0 0 598 0 15 113 87 103 ]
C [ 56 96 271 15 6 0 0 0 598 99 34 56 72 ]
G [ 160 131 85 357 0 2 598 0 0 6 29 65 127 ]
T [ 170 215 135 170 592 596 0 0 0 478 422 390 296 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1311.1 MA1311 1 WRKY28 Arabidopsis thaliana
WRKY GCM domain factors
MA1311.2 MA1311 2 WRKY28 Arabidopsis thaliana
WRKY GCM domain factors
MA1311.3 MA1311 3 WRKY28 Arabidopsis thaliana
WRKY GCM domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0420.1

ChIP-seq Centrality
-log(P-value): 19313.4

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0420.1

ChIP-seq Centrality
-log(P-value): 19182.5

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: