Detailed information of matrix profile MA1552.2

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Profile summary
Name: RARB
Matrix ID: MA1552.2
Class: Nuclear receptors with C4 zinc fingers
Family: Thyroid hormone receptor-related factors (NR1)
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation: 1738600
Uniprot ID: P10826  
Source: 28473536
Comment: TF has several motif variants.

Sequence logo

Frequency matrix

         
A [ 217 361 3 10 21 5 322 3 16 472 76 12 10 ]
C [ 30 45 17 4 64 472 0 5 8 26 472 472 101 ]
G [ 169 111 472 472 52 7 150 0 472 18 0 8 45 ]
T [ 56 0 31 76 472 16 3 472 4 13 7 16 371 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1552.1 MA1552 1 RARB Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
MA1552.2 MA1552 2 RARB Homo sapiens
Thyroid hormone receptor-related factors (NR1) Nuclear receptors with C4 zinc fingers
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

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GC Content: