Detailed information of matrix profile MA1664.2

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Profile summary
Name: HSFA6B
Matrix ID: MA1664.2
Class: Heat shock factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 27493213 27493213
Uniprot ID: Q9LUH8  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 205 228 47 15 13 27 366 14 1114 1044 268 287 ]
C [ 245 412 44 18 1108 50 78 11 7 15 259 397 ]
G [ 413 234 14 9 20 16 660 1121 12 40 364 238 ]
T [ 293 282 1051 1114 15 1063 52 10 23 57 265 234 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1664.1 MA1664 1 HSFA6B Arabidopsis thaliana
Heat shock factors
MA1664.2 MA1664 2 HSFA6B Arabidopsis thaliana
Heat shock factors
MA1664.3 MA1664 3 HSFA6B Arabidopsis thaliana
HSF Heat shock factors
     

-log(P-value) = 1117.4

TFFM details

TFFM ID: TFFM0900.1

ChIP-seq Centrality
-log(P-value): 1456.5

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0900.1

ChIP-seq Centrality
-log(P-value): 1647.79

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: