Detailed information of matrix profile MA1801.1

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Profile summary
Name: TREE1
Matrix ID: MA1801.1
Class: C2H2 zinc finger factors
Family:
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: PBM
Validation: 33139535
Uniprot ID: O81793  
Source: 24477691
Comment: No family information available.

Sequence logo

Frequency matrix

         
A [ 331 174 50 191 809 0 191 99 316 386 201 ]
C [ 223 174 158 208 0 0 809 0 27 170 201 ]
G [ 223 477 242 96 0 901 0 0 433 177 297 ]
T [ 223 174 550 504 191 99 0 901 224 267 302 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1801.1 MA1801 1 TREE1 Arabidopsis thaliana
C2H2 zinc finger factors
MA1801.2 MA1801 2 TREE1 Arabidopsis thaliana
C2H2 C2H2 zinc finger factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: