Detailed information of matrix profile MA2015.1

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Profile summary
Name: NAC002
Matrix ID: MA2015.1
Class: beta-Hairpin exposed by an alpha/beta-scaffold
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 24914054
Uniprot ID: Q39013  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 346 501 175 1143 31 38 47 1066 1070 26 69 293 387 ]
C [ 237 152 531 12 1096 13 753 58 16 1013 144 243 259 ]
G [ 229 185 115 3 14 1089 103 13 16 64 63 232 195 ]
T [ 357 331 348 11 28 29 266 32 67 66 893 401 328 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2015.1 MA2015 1 NAC002 Arabidopsis thaliana
NAC beta-Hairpin exposed by an alpha/beta-scaffold
MA2015.2 MA2015 2 NAC002 Arabidopsis thaliana
NAC GCM domain factors
     

-log(P-value) = 132.679

TFFM details

TFFM ID: TFFM0975.1

ChIP-seq Centrality
-log(P-value): 2735.21

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0975.1

ChIP-seq Centrality
-log(P-value): 2630.84

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: