Detailed information of matrix profile MA2017.1

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Profile summary
Name: JUB1
Matrix ID: MA2017.1
Class: GCM domain factors
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 22345491
Uniprot ID: Q9SK55  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 151 113 96 458 9 9 3 12 33 288 68 67 142 148 ]
C [ 79 153 236 30 492 8 12 476 10 36 122 47 91 102 ]
G [ 132 65 115 10 0 489 492 0 457 82 196 121 139 98 ]
T [ 147 178 62 11 8 3 2 21 9 103 123 274 137 161 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA2017.1 MA2017 1 JUB1 Arabidopsis thaliana
NAC GCM domain factors
MA2017.2 MA2017 2 JUB1 Arabidopsis thaliana
NAC GCM domain factors
     

-log(P-value) = 114.758

TFFM details

TFFM ID: TFFM0976.1

ChIP-seq Centrality
-log(P-value): 504.031

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0976.1

ChIP-seq Centrality
-log(P-value): 526.759

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: