Detailed information of matrix profile UN0549.1

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Profile summary

Name: GCM1::SOX2
Matrix ID: UN0549.1
Class: GCM domain factors::High-mobility group (HMG) domain factors
Family: GCM::SOX-related factors
Collection: UNVALIDATED
Taxon: Vertebrates
Species: Homo sapiens
Data Type: HT-SELEX
Validation:
Uniprot ID: P48431   Q9NP62  
Source: 26550823
Comment:

Sequence logo

Frequency matrix

         
A [ 481 2 203 7 14 0 0 86 197 34 636 15 2 13 0 59 95 ]
C [ 16 8 1 540 10 8 0 245 175 408 18 29 0 21 5 150 343 ]
G [ 155 15 433 97 636 636 636 26 216 15 5 49 34 636 6 202 83 ]
T [ 1 636 3 103 13 0 12 279 48 179 24 636 636 1 636 434 293 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0549.1 UN0549 1 GCM1::SOX2 Homo sapiens
GCM::SOX-related factors GCM domain factors::High-mobility group (HMG) domain factors
UN0549.2 UN0549 2 GCM1::SOX2 Homo sapiens
GCM::SOX-related factors GCM domain factors::High-mobility group (HMG) domain factors
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: