Detailed information of matrix profile UN0853.1

  1. Home
  2. Matrix > UN0853.1
This profile is unvalidated. Please help our curators to validate profiles by performing experiments and/or by pointing to literature.

Community curation

Your email will only be used by our team to contact you.

If your contribution is significant, we will acknowledge it in the manuscript of the JASPAR upcoming release. We do not share your information with any third parties.

Profile summary

Name: BHLH157
Matrix ID: UN0853.1
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH
Collection: UNVALIDATED
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation:
Uniprot ID: Q7XJU0  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 543 222 641 168 831 33 0 0 293 300 297 233 378 577 273 185 226 ]
C [ 67 87 0 20 81 966 0 0 13 128 253 260 114 57 182 195 141 ]
G [ 277 628 23 635 50 0 1000 0 614 131 138 256 273 145 172 67 91 ]
T [ 111 60 334 175 37 0 0 1000 77 439 310 250 233 219 371 550 540 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
UN0853.1 UN0853 1 BHLH157 Arabidopsis thaliana
bHLH Basic helix-loop-helix factors (bHLH)
     
There is no centrality information of the model.
TFFM first order profile doesn't exist for this profile.
TFFM detailed profile doesn't exist for this profile.

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: