Detailed information of matrix profile MA1210.2

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Profile summary
Name: HAT22
Matrix ID: MA1210.2
Class: Homeo domain factors
Family: HD-ZIP
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 8253077
Uniprot ID: P46604  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 1122 950 362 3066 3127 55 2276 3128 52 83 259 1122 1120 ]
C [ 540 791 2470 41 25 23 309 14 9 20 92 406 459 ]
G [ 543 488 86 21 6 15 309 26 18 78 2650 761 607 ]
T [ 1011 987 298 88 58 3123 322 48 3137 3035 215 927 1030 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1210.1 MA1210 1 HAT22 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA1210.2 MA1210 2 HAT22 Arabidopsis thaliana
HD-ZIP Homeo domain factors
MA1210.3 MA1210 3 HAT22 Arabidopsis thaliana
HD-ZIP Homeo domain factors
     

-log(P-value) = 160.432

TFFM details

TFFM ID: TFFM0834.1

ChIP-seq Centrality
-log(P-value): 1783.52

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0834.1

ChIP-seq Centrality
-log(P-value): 1701.49

TFFM detailed summary logos

Description:

Alias:

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Consensus:

Included Models:

GC Content: