Detailed information of matrix profile MA1390.1

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Profile summary
Name: HHO2
Matrix ID: MA1390.1
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 25215497
Uniprot ID: Q8VZS3  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 110 296 441 44 90 201 316 489 6 598 17 63 5 ]
C [ 35 48 7 88 383 128 91 10 3 2 4 51 595 ]
G [ 401 129 46 17 25 128 81 51 504 0 0 26 0 ]
T [ 54 127 106 451 102 143 112 50 87 0 579 460 0 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1390.1 MA1390 1 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.2 MA1390 2 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.3 MA1390 3 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0240.1

ChIP-seq Centrality
-log(P-value): 8656.37

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0240.1

ChIP-seq Centrality
-log(P-value): 9479.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: