Detailed information of matrix profile MA1390.2

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Profile summary
Name: HHO2
Matrix ID: MA1390.2
Class: Tryptophan cluster factors
Family: GARP_G2-like
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type:
Validation: 25215497
Uniprot ID: Q8VZS3  
Source: ReMap
Comment:

Sequence logo

Frequency matrix

         
A [ 395 469 1046 1453 10 1510 37 55 15 155 717 443 506 497 ]
C [ 471 240 130 14 7 4 2 23 1518 960 181 238 280 237 ]
G [ 237 435 123 22 1350 16 3 14 1 119 291 258 249 299 ]
T [ 435 394 239 49 171 8 1496 1446 4 304 349 599 503 505 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1390.1 MA1390 1 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.2 MA1390 2 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
MA1390.3 MA1390 3 HHO2 Arabidopsis thaliana
GARP_G2-like Tryptophan cluster factors
     

-log(P-value) = 811.032

TFFM details

TFFM ID: TFFM0849.1

ChIP-seq Centrality
-log(P-value): 734.56

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0849.1

ChIP-seq Centrality
-log(P-value): 766.676

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: